PH01000171G0150's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G17040 : 1.00E-118
Blast annotation: SH2 domain protein A
2.Location
Scaffold: PH01000171
Strand: -
| Region | Start | End |
| gene | 95352 | 102438 |
| mRNA | 95352 | 102438 |
| exon | 95352 | 95622 |
| exon | 95725 | 96071 |
| exon | 96189 | 96351 |
| exon | 96440 | 96723 |
| exon | 96805 | 97131 |
| exon | 98936 | 99103 |
| exon | 99194 | 99271 |
| exon | 99454 | 99543 |
| exon | 99935 | 100012 |
| exon | 100195 | 100284 |
| exon | 100406 | 100564 |
| exon | 100827 | 101018 |
| exon | 101614 | 102438 |
| CDS | 95436 | 95622 |
| CDS | 95725 | 96071 |
| CDS | 96189 | 96351 |
| CDS | 96440 | 96723 |
| CDS | 96805 | 97131 |
| CDS | 98936 | 99103 |
| CDS | 99194 | 99271 |
| CDS | 99454 | 99543 |
| CDS | 99935 | 100012 |
| CDS | 100195 | 100284 |
| CDS | 100406 | 100564 |
| CDS | 100827 | 101018 |
| CDS | 101614 | 101793 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | STAT |
| Transcription_Regulator(from PlantTFDB) | STAT |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0004871 | signal transducer activity |
| GO:0005515 | protein binding |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0007165 | signal transduction |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.