PH01000171G0860's details annotation
1.Annotation
ICBR annotation: ARABIDILLO-1, putative, expressed
Blast result AT2G44900 : 0.00E+00
Blast annotation: ARABIDILLO-1
2.Location
Scaffold: PH01000171
Strand: +
| Region | Start | End |
| gene | 658127 | 675122 |
| mRNA | 658127 | 675122 |
| exon | 658127 | 658799 |
| exon | 658881 | 659894 |
| exon | 659984 | 660142 |
| exon | 660240 | 660320 |
| exon | 660429 | 660560 |
| exon | 660806 | 660886 |
| exon | 660995 | 661126 |
| exon | 661850 | 661977 |
| exon | 662109 | 662196 |
| exon | 662616 | 662710 |
| exon | 664716 | 664779 |
| exon | 665960 | 666064 |
| exon | 667947 | 668122 |
| exon | 670810 | 671031 |
| exon | 671294 | 671378 |
| exon | 671692 | 671769 |
| exon | 671996 | 672295 |
| exon | 674325 | 675122 |
| CDS | 658482 | 658799 |
| CDS | 658881 | 659894 |
| CDS | 659984 | 660142 |
| CDS | 660240 | 660320 |
| CDS | 660429 | 660560 |
| CDS | 660806 | 660886 |
| CDS | 660995 | 661126 |
| CDS | 661850 | 661977 |
| CDS | 662109 | 662196 |
| CDS | 662616 | 662710 |
| CDS | 664716 | 664779 |
| CDS | 665960 | 666064 |
| CDS | 667947 | 668122 |
| CDS | 670810 | 671031 |
| CDS | 671294 | 671378 |
| CDS | 671692 | 671769 |
| CDS | 671996 | 672295 |
| CDS | 674325 | 674435 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12937.6 | F-box-like | 55 | 99 |
| PF00514.22 | Arm | 416 | 450 |
| PF00514.22 | Arm | 456 | 491 |
| PF00514.22 | Arm | 494 | 536 |
| PF00514.22 | Arm | 570 | 607 |
| PF00514.22 | Arm | 609 | 649 |
| PF00514.22 | Arm | 654 | 693 |
| PF00514.22 | Arm | 695 | 737 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.