Annotation of co-expression genes

PH01000171G1160's details annotation

1.Annotation

ICBR annotation: MYB family transcription factor, putative, expressed

Blast result AT5G47390 : 1.00E-84
Blast annotation: myb-like transcription factor family protein

2.Location

Scaffold: PH01000171
Strand: +

RegionStartEnd
gene935966940369
mRNA935966940369
exon935966936739
exon938058938266
exon938551940369
CDS936490936739
CDS938058938266
CDS938551939018

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000413extrinsic to membrane,
photosystem II,
oxygen evolving complex,
coexpression networkCFinderM001385cytoskeleton,
regulation of actin filament polymerization,
carbon-sulfur lyase activity,
MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
RNA_transport

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)MYB-related
Transcription_Regulator(from PlantTFDB)MYB_related

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00249.30Myb_DNA-binding86130

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003676nucleic acid binding
GO:0003677DNA binding
GO:0003682chromatin binding
GO:0008270zinc ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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