PH01000172G0050's details annotation
1.Annotation
ICBR annotation: PHD finger protein, putative, expressed
Blast result AT1G14510 : 8.60E-49
Blast annotation: alfin-like 7
2.Location
Scaffold: PH01000172
Strand: +
| Region | Start | End |
| gene | 29335 | 35179 |
| mRNA | 29335 | 35179 |
| exon | 29335 | 30615 |
| exon | 32093 | 32321 |
| exon | 33799 | 33925 |
| exon | 34036 | 34225 |
| exon | 34651 | 35179 |
| CDS | 30591 | 30615 |
| CDS | 32093 | 32321 |
| CDS | 33799 | 33925 |
| CDS | 34036 | 34225 |
| CDS | 34651 | 34709 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12165.7 | Alfin | 9 | 103 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.