PH01000172G0820's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G18420 : 9.90E-81
Blast annotation: -
2.Location
Scaffold: PH01000172
Strand: -
| Region | Start | End |
| gene | 644315 | 649613 |
| mRNA | 644315 | 649613 |
| exon | 644315 | 644511 |
| exon | 646565 | 646643 |
| exon | 647281 | 647422 |
| exon | 647507 | 647580 |
| exon | 648002 | 648139 |
| exon | 648218 | 648371 |
| exon | 649053 | 649613 |
| CDS | 644414 | 644511 |
| CDS | 646565 | 646643 |
| CDS | 647281 | 647422 |
| CDS | 647507 | 647580 |
| CDS | 648002 | 648139 |
| CDS | 648218 | 648371 |
| CDS | 649053 | 649057 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000054 | copper ion transmembrane transporter activity, copper_ion_transmembrane_transport hydrolase activity, |
| coexpression network | CFinderM000127 | |
| coexpression network | CFinderM001514 | transferase activity, transferring hexosyl groups, metabolic process, oligopeptide transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF10155.8 | DUF2363 | 102 | 226 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.