Annotation of co-expression genes

PH01000172G1040's details annotation

1.Annotation

ICBR annotation: phosphoribosylamine--glycine ligase, putative, expressed

Blast result AT1G09830 : 0.00E+00
Blast annotation: Glycinamide ribonucleotide (GAR) synthetase

2.Location

Scaffold: PH01000172
Strand: +

RegionStartEnd
gene824033828984
mRNA824033828984
exon824033825074
exon825330825703
exon826103826633
exon828001828984
CDS824837825074
CDS825330825703
CDS826103826633
CDS828001828414

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000058cysteamine dioxygenase activity,
LBD Transcription_Regulator(from PlantTFDB)
oxidation-reduction process,
Taurine_and_hypotaurine_metabolism

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02844.14GARS_N84185
PF01071.18GARS_A186380
PF02843.15GARS_C415508

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Purine metabolismphosphoribosylamine--glycine ligase [EC:6.3.4.13]ko00230K01945

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0004637phosphoribosylamine-glycine ligase activity
GO:0005524ATP binding
GO:0009113purine nucleobase biosynthetic process
GO:0046872metal ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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