PH01000173G0130's details annotation
1.Annotation
ICBR annotation: cyclin, putative, expressed
Blast result AT5G65420 : 2.20E-64
Blast annotation: CYCLIN D4;1
2.Location
Scaffold: PH01000173
Strand: -
| Region | Start | End |
| gene | 121990 | 126641 |
| mRNA | 121990 | 126641 |
| exon | 121990 | 123102 |
| exon | 123265 | 123386 |
| exon | 123485 | 123686 |
| exon | 123785 | 123883 |
| exon | 123987 | 124073 |
| exon | 124259 | 124603 |
| exon | 125951 | 126641 |
| CDS | 122878 | 123102 |
| CDS | 123265 | 123386 |
| CDS | 123485 | 123686 |
| CDS | 123785 | 123883 |
| CDS | 123987 | 124073 |
| CDS | 124259 | 124603 |
| CDS | 125951 | 126088 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000082 | carbon-nitrogen ligase activity, with glutamine as amido-N-donor, Biotin_metabolism Fatty_acid_biosynthesis metabolic process, RNA-dependent DNA replication, N,N-dimethylaniline monooxygenase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00134.22 | Cyclin_N | 136 | 251 |
| PF02984.18 | Cyclin_C | 254 | 345 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005634 | nucleus |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.