PH01000173G0220's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G24610 : 1.00E-107
Blast annotation: -
2.Location
Scaffold: PH01000173
Strand: +
| Region | Start | End |
| gene | 177338 | 184986 |
| mRNA | 177338 | 184986 |
| exon | 177338 | 179177 |
| exon | 179216 | 179463 |
| exon | 179783 | 179932 |
| exon | 180148 | 180329 |
| exon | 180431 | 180505 |
| exon | 180587 | 180721 |
| exon | 182006 | 182124 |
| exon | 183037 | 183333 |
| exon | 183405 | 183492 |
| exon | 183679 | 183784 |
| exon | 183932 | 184042 |
| exon | 184368 | 184986 |
| CDS | 178748 | 179177 |
| CDS | 179216 | 179463 |
| CDS | 179783 | 179932 |
| CDS | 180148 | 180329 |
| CDS | 180431 | 180505 |
| CDS | 180587 | 180721 |
| CDS | 182006 | 182124 |
| CDS | 183037 | 183333 |
| CDS | 183405 | 183492 |
| CDS | 183679 | 183784 |
| CDS | 183932 | 184042 |
| CDS | 184368 | 184397 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.