PH01000173G1060's details annotation
1.Annotation
ICBR annotation: cold-induced protein, putative, expressed
Blast result AT5G42920 : 3.00E-179
Blast annotation: THO complex, subunit 5
2.Location
Scaffold: PH01000173
Strand: +
| Region | Start | End |
| gene | 721259 | 729915 |
| mRNA | 721259 | 729915 |
| exon | 721259 | 724724 |
| exon | 724814 | 725104 |
| exon | 725782 | 726118 |
| exon | 726823 | 726921 |
| exon | 727506 | 727840 |
| exon | 728070 | 728317 |
| exon | 728616 | 729243 |
| exon | 729329 | 729442 |
| exon | 729536 | 729915 |
| CDS | 724485 | 724724 |
| CDS | 724814 | 725104 |
| CDS | 725782 | 726118 |
| CDS | 726823 | 726921 |
| CDS | 727506 | 727840 |
| CDS | 728070 | 728317 |
| CDS | 728616 | 729243 |
| CDS | 729329 | 729442 |
| CDS | 729536 | 729790 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF09766.8 | FimP | 77 | 290 |
| PF09766.8 | FimP | 290 | 465 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| RNA transport | THO complex subunit 5 | ko03013 | K13174 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.