PH01000173G1260's details annotation
1.Annotation
ICBR annotation: ybaK/prolyl-tRNA synthetase family protein, putative, expressed
Blast result AT1G44835 : 2.80E-81
Blast annotation: YbaK/aminoacyl-tRNA synthetase-associated domain
2.Location
Scaffold: PH01000173
Strand: -
| Region | Start | End |
| gene | 893542 | 902717 |
| mRNA | 893542 | 902717 |
| exon | 893542 | 894466 |
| exon | 895054 | 895146 |
| exon | 895220 | 895353 |
| exon | 898863 | 898925 |
| exon | 899581 | 899731 |
| exon | 899807 | 899877 |
| exon | 900127 | 900212 |
| exon | 900718 | 900767 |
| exon | 901357 | 901433 |
| exon | 901519 | 901579 |
| exon | 901669 | 901722 |
| exon | 901811 | 901870 |
| exon | 902285 | 902717 |
| CDS | 894038 | 894466 |
| CDS | 895054 | 895146 |
| CDS | 895220 | 895353 |
| CDS | 898863 | 898925 |
| CDS | 899581 | 899731 |
| CDS | 899807 | 899877 |
| CDS | 900127 | 900212 |
| CDS | 900718 | 900767 |
| CDS | 901357 | 901433 |
| CDS | 901519 | 901579 |
| CDS | 901669 | 901722 |
| CDS | 901811 | 901870 |
| CDS | 902285 | 902323 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000994 | aminoacyl-tRNA_editing_activity metallopeptidase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04073.14 | tRNA_edit | 24 | 151 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0002161 | aminoacyl-tRNA editing activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.