PH01000174G0140's details annotation
1.Annotation
ICBR annotation: Homeobox domain containing protein, expressed
Blast result AT4G29940 : 1.90E-29
Blast annotation: pathogenesis related homeodomain protein A
2.Location
Scaffold: PH01000174
Strand: -
| Region | Start | End |
| gene | 106095 | 111393 |
| mRNA | 106095 | 111393 |
| exon | 106095 | 107127 |
| exon | 107265 | 107468 |
| exon | 108269 | 108358 |
| exon | 108577 | 108774 |
| exon | 108945 | 109295 |
| exon | 109392 | 109507 |
| exon | 110541 | 111393 |
| CDS | 106879 | 107127 |
| CDS | 107265 | 107468 |
| CDS | 108269 | 108358 |
| CDS | 108577 | 108774 |
| CDS | 108945 | 109295 |
| CDS | 109392 | 109507 |
| CDS | 110541 | 110613 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001374 | Others Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.