PH01000174G0320's details annotation
1.Annotation
ICBR annotation: bZIP transcription factor domain containing protein, expressed
Blast result AT5G28770 : 9.10E-35
Blast annotation: bZIP transcription factor family protein
2.Location
Scaffold: PH01000174
Strand: +
| Region | Start | End |
| gene | 226807 | 232131 |
| mRNA | 226807 | 232131 |
| exon | 226807 | 228770 |
| exon | 229631 | 229724 |
| exon | 230303 | 230501 |
| exon | 231252 | 231327 |
| exon | 231413 | 231538 |
| exon | 231748 | 232131 |
| CDS | 228531 | 228770 |
| CDS | 229631 | 229724 |
| CDS | 230303 | 230501 |
| CDS | 231252 | 231327 |
| CDS | 231413 | 231538 |
| CDS | 231748 | 232101 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000139 | metabolic process, transferase activity, transferring hexosyl groups, cysteine metabolic process, phenylalanyl-tRNA aminoacylation, cysteine desulfurase activity, phenylalanine-tRNA ligase activity, |
| coexpression network | CFinderM000466 |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | bZIP |
| Transcription_Regulator(from PlantTFDB) | bZIP |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00170.20 | bZIP_1 | 172 | 225 |
| PF12498.7 | bZIP_C | 241 | 357 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0043565 | sequence-specific DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.