PH01000174G0790's details annotation
1.Annotation
ICBR annotation: BT1 family protein, putative, expressed
Blast result AT2G32040 : 6.00E-127
Blast annotation: Major facilitator superfamily protein
2.Location
Scaffold: PH01000174
Strand: +
| Region | Start | End |
| gene | 532911 | 540178 |
| mRNA | 532911 | 540178 |
| exon | 532911 | 533941 |
| exon | 534348 | 534702 |
| exon | 534760 | 534800 |
| exon | 535067 | 535229 |
| exon | 535993 | 536141 |
| exon | 536847 | 537014 |
| exon | 538054 | 538222 |
| exon | 538302 | 538394 |
| exon | 539129 | 540178 |
| CDS | 533730 | 533941 |
| CDS | 534348 | 534702 |
| CDS | 534760 | 534800 |
| CDS | 535067 | 535229 |
| CDS | 535993 | 536141 |
| CDS | 536847 | 537014 |
| CDS | 538054 | 538222 |
| CDS | 538302 | 538394 |
| CDS | 539129 | 539413 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03092.15 | BT1 | 165 | 313 |
| PF03092.15 | BT1 | 318 | 361 |
| PF03092.15 | BT1 | 365 | 532 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.