PH01000176G0540's details annotation
1.Annotation
ICBR annotation: auxin response factor 19, putative, expressed
Blast result AT1G19220 : 4.00E-169
Blast annotation: auxin response factor 19
2.Location
Scaffold: PH01000176
Strand: +
| Region | Start | End |
| gene | 385219 | 394541 |
| mRNA | 385219 | 394541 |
| exon | 385219 | 386174 |
| exon | 386795 | 386913 |
| exon | 388408 | 388506 |
| exon | 388587 | 388643 |
| exon | 388757 | 388912 |
| exon | 388997 | 389081 |
| exon | 389705 | 389762 |
| exon | 389981 | 390145 |
| exon | 390244 | 390366 |
| exon | 390582 | 390657 |
| exon | 390740 | 390869 |
| exon | 391481 | 393327 |
| exon | 393452 | 393642 |
| exon | 393917 | 394541 |
| CDS | 386114 | 386174 |
| CDS | 386795 | 386913 |
| CDS | 388408 | 388506 |
| CDS | 388587 | 388643 |
| CDS | 388757 | 388912 |
| CDS | 388997 | 389081 |
| CDS | 389705 | 389762 |
| CDS | 389981 | 390145 |
| CDS | 390244 | 390366 |
| CDS | 390582 | 390657 |
| CDS | 390740 | 390869 |
| CDS | 391481 | 393327 |
| CDS | 393452 | 393642 |
| CDS | 393917 | 394115 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | B3-ARF |
| Transcription_Regulator(from PlantTFDB) | ARF |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02362.20 | B3 | 135 | 211 |
| PF06507.12 | Auxin_resp | 250 | 333 |
| PF02309.15 | AUX_IAA | 987 | 1073 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0009725 | response to hormone stimulus |
| GO:0046983 | protein dimerization activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.