PH01000176G1160's details annotation
1.Annotation
ICBR annotation: plant-specific domain TIGR01589 family protein, putative, expressed
Blast result AT3G10250 : 8.00E-49
Blast annotation: Plant protein 1589 of unknown function
2.Location
Scaffold: PH01000176
Strand: -
| Region | Start | End |
| gene | 907700 | 912759 |
| mRNA | 907700 | 912759 |
| exon | 907700 | 908647 |
| exon | 909329 | 909412 |
| exon | 909502 | 909975 |
| exon | 910765 | 910947 |
| exon | 912182 | 912759 |
| CDS | 908274 | 908647 |
| CDS | 909329 | 909412 |
| CDS | 909502 | 909975 |
| CDS | 910765 | 910947 |
| CDS | 912182 | 912311 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF09713.9 | A_thal_3526 | 43 | 60 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.