PH01000179G0830's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT3G28430 : 4.40E-57
Blast annotation: -
2.Location
Scaffold: PH01000179
Strand: -
| Region | Start | End |
| gene | 541314 | 545099 |
| mRNA | 541314 | 545099 |
| exon | 541314 | 541958 |
| exon | 542121 | 542287 |
| exon | 542395 | 542554 |
| exon | 542999 | 543058 |
| exon | 543268 | 545099 |
| CDS | 541653 | 541958 |
| CDS | 542121 | 542287 |
| CDS | 542395 | 542554 |
| CDS | 542999 | 543058 |
| CDS | 543268 | 543378 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000819 | katanin_complex microtubule_severing cellulose biosynthetic process, microtubule binding, cellulose synthase (UDP-forming) activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.