PH01000180G0670's details annotation
1.Annotation
ICBR annotation: Myb-like DNA-binding domain containing protein, putative, expressed
Blast result AT2G01060 : 4.50E-25
Blast annotation: myb-like HTH transcriptional regulator family protein
2.Location
Scaffold: PH01000180
Strand: -
| Region | Start | End |
| gene | 481788 | 487550 |
| mRNA | 481788 | 487550 |
| exon | 481788 | 483244 |
| exon | 484466 | 484627 |
| exon | 485386 | 485439 |
| exon | 485796 | 487550 |
| CDS | 482696 | 483244 |
| CDS | 484466 | 484627 |
| CDS | 485386 | 485439 |
| CDS | 485796 | 486011 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001150 | CBM22 Carbohydrate-Binding_Modules GH10 Glycoside_Hydrolases nucleosome, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14379.5 | Myb_CC_LHEQLE | 145 | 169 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.