PH01000180G1130's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G20200 : 5.50E-11
Blast annotation: nucleoporin-related
2.Location
Scaffold: PH01000180
Strand: -
| Region | Start | End |
| gene | 809522 | 813803 |
| mRNA | 809522 | 813803 |
| exon | 809522 | 810301 |
| exon | 810676 | 811161 |
| exon | 812322 | 812396 |
| exon | 812514 | 812855 |
| exon | 813137 | 813803 |
| CDS | 809855 | 810301 |
| CDS | 810676 | 811161 |
| CDS | 812322 | 812396 |
| CDS | 812514 | 812855 |
| CDS | 813137 | 813304 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000402 | spliceosomal complex, nuclear mRNA splicing, via spliceosome, GRAS Transcription_Regulator(from PlantTFDB) protein binding, Spliceosome |
| coexpression network | CFinderM000496 | cullin-RING ubiquitin ligase complex, ubiquitin protein ligase binding, Pseudo ARR-B Transcription_Regulator(from iTAK) ubiquitin-dependent protein catabolic process, diphosphomevalonate decarboxylase activity, L,L-diaminopimelate_aminotransferase_activity Citrate_cycle_(TCA_cycle) Pyruvate_metabolism |
| coexpression network | CFinderM000823 | ABC_transporters |
| coexpression network | CFinderM001144 | cullin-RING ubiquitin ligase complex, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.