PH01000180G1240's details annotation
1.Annotation
ICBR annotation: targeting protein for Xklp2, putative, expressed
Blast result AT4G32330 : 3.40E-30
Blast annotation: TPX2 (targeting protein for Xklp2) protein family
2.Location
Scaffold: PH01000180
Strand: +
| Region | Start | End |
| gene | 885725 | 889387 |
| mRNA | 885725 | 889387 |
| exon | 885725 | 886331 |
| exon | 887271 | 887462 |
| exon | 887719 | 887829 |
| exon | 888868 | 889387 |
| CDS | 886179 | 886331 |
| CDS | 887271 | 887462 |
| CDS | 887719 | 887829 |
| CDS | 888868 | 889353 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000486 | |
| coexpression network | CFinderM000823 | ABC_transporters |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06886.10 | TPX2 | 108 | 136 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.