PH01000181G0730's details annotation
1.Annotation
ICBR annotation: OsPOP7 - Putative Prolyl Oligopeptidase homologue, expressed
Blast result AT2G47390 : 3.00E-148
Blast annotation: Prolyl oligopeptidase family protein
2.Location
Scaffold: PH01000181
Strand: +
| Region | Start | End |
| gene | 487274 | 490445 |
| mRNA | 487274 | 490445 |
| exon | 487274 | 488026 |
| exon | 488363 | 488483 |
| exon | 488706 | 488922 |
| exon | 489048 | 489158 |
| exon | 489312 | 489357 |
| exon | 489449 | 489558 |
| exon | 489640 | 490445 |
| CDS | 487787 | 488026 |
| CDS | 488363 | 488483 |
| CDS | 488706 | 488922 |
| CDS | 489048 | 489158 |
| CDS | 489312 | 489357 |
| CDS | 489449 | 489558 |
| CDS | 489640 | 490276 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001090 | GT14 GlycosylTransferases proteolysis, membrane, aminopeptidase activity, |
| coexpression network | CFinderM001313 | spliceosomal complex, aminopeptidase activity, ubiquitin thiolesterase activity, nuclear mRNA splicing, via spliceosome, Spliceosome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.