Annotation of co-expression genes

PH01000181G1140's details annotation

1.Annotation

ICBR annotation: SET domain containing protein, expressed

Blast result AT4G02020 : 6.90E-79
Blast annotation: SET domain-containing protein

2.Location

Scaffold: PH01000181
Strand: -

RegionStartEnd
gene714853725971
mRNA714853725971
exon714853715173
exon715245715322
exon715436715564
exon715651715698
exon715786715876
exon716054716180
exon716506716630
exon717194717213
exon717554718105
exon718804718875
exon718952718999
exon719116719253
exon719395719479
exon720690720856
exon721328721361
exon721412721746
exon722054725971
CDS714988715173
CDS715245715322
CDS715436715564
CDS715651715698
CDS715786715876
CDS716054716180
CDS716506716630
CDS717194717213
CDS717554718105
CDS718804718875
CDS718952718999
CDS719116719253
CDS719395719479
CDS720690720856
CDS721328721361
CDS721412721746
CDS722054722104

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)SET

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00856.27SET625728

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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