PH01000181G1340's details annotation
1.Annotation
ICBR annotation: OsClp4 - Putative Clp protease homologue, expressed
Blast result AT1G02560 : 2.00E-110
Blast annotation: nuclear encoded CLP protease 5
2.Location
Scaffold: PH01000181
Strand: -
| Region | Start | End |
| gene | 819926 | 823561 |
| mRNA | 819926 | 823561 |
| exon | 819926 | 820310 |
| exon | 820594 | 820682 |
| exon | 821069 | 821126 |
| exon | 821645 | 821744 |
| exon | 821928 | 822000 |
| exon | 822093 | 822138 |
| exon | 822708 | 822800 |
| exon | 822911 | 823034 |
| exon | 823319 | 823561 |
| CDS | 820113 | 820310 |
| CDS | 820594 | 820682 |
| CDS | 821069 | 821126 |
| CDS | 821645 | 821744 |
| CDS | 821928 | 822000 |
| CDS | 822093 | 822138 |
| CDS | 822708 | 822800 |
| CDS | 822911 | 823034 |
| CDS | 823319 | 823416 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000535 | GT37 GlycosylTransferases CMGC_MAPK (from iTAK) |
| coexpression network | CFinderM000548 | superoxide dismutase activity, superoxide metabolic process, Peroxisome Aminoacyl-tRNA_biosynthesis carbon-nitrogen ligase activity, with glutamine as amido-N-donor, |
| coexpression network | CFinderM000711 | GH35 Glycoside_Hydrolases Jumonji Transcription_Regulator(from iTAK) Valine,_leucine_and_isoleucine_biosynthesis Glycosphingolipid_biosynthesis_-_ganglio_series Other_glycan_degradation Glycosaminoglycan_degradation ketol-acid reductoisomerase activity, coproporphyrinogen oxidase activity, beta-galactosidase activity, Sphingolipid_metabolism Pantothenate_and_CoA_biosynthesis |
| coexpression network | CFinderM000928 | carbon-nitrogen ligase activity, with glutamine as amido-N-donor, Aminoacyl-tRNA_biosynthesis Jumonji Transcription_Regulator(from iTAK) translation, |
| coexpression network | CFinderM001151 | Aminoacyl-tRNA_biosynthesis carbon-nitrogen ligase activity, with glutamine as amido-N-donor, Jumonji Transcription_Regulator(from iTAK) translation, |
| coexpression network | CFinderM001688 | CBM22 Carbohydrate-Binding_Modules GH10 Glycoside_Hydrolases CMGC_MAPK (from iTAK) |
| coexpression network | CFinderM001690 | GT37 GlycosylTransferases cell wall biogenesis, proteolysis, protein catabolic process, Various_types_of_N-glycan_biosynthesis N-Glycan_biosynthesis galactoside 2-alpha-L-fucosyltransferase activity, mRNA_surveillance_pathway |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00574.22 | CLP_protease | 92 | 269 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004252 | serine-type endopeptidase activity |
| GO:0006508 | proteolysis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.