PH01000182G1110's details annotation
1.Annotation
ICBR annotation: AMP-binding enzyme, putative, expressed
Blast result AT4G23850 : 8.00E-146
Blast annotation: AMP-dependent synthetase and ligase family protein
2.Location
Scaffold: PH01000182
Strand: -
| Region | Start | End |
| gene | 731741 | 738066 |
| mRNA | 731741 | 738066 |
| exon | 731741 | 732547 |
| exon | 732795 | 732869 |
| exon | 733017 | 733136 |
| exon | 733224 | 733406 |
| exon | 733592 | 733731 |
| exon | 734168 | 734413 |
| exon | 734978 | 735095 |
| exon | 735189 | 735264 |
| exon | 735447 | 735513 |
| exon | 735720 | 735834 |
| exon | 736249 | 736455 |
| exon | 736539 | 736649 |
| exon | 736794 | 736828 |
| exon | 736871 | 736957 |
| exon | 737425 | 738066 |
| CDS | 732512 | 732547 |
| CDS | 732795 | 732869 |
| CDS | 733017 | 733136 |
| CDS | 733224 | 733406 |
| CDS | 733592 | 733731 |
| CDS | 734168 | 734413 |
| CDS | 734978 | 735095 |
| CDS | 735189 | 735264 |
| CDS | 735447 | 735513 |
| CDS | 735720 | 735834 |
| CDS | 736249 | 736455 |
| CDS | 736539 | 736649 |
| CDS | 736794 | 736828 |
| CDS | 736871 | 736957 |
| CDS | 737425 | 737500 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00501.27 | AMP-binding | 31 | 404 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0008152 | metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.