PH01000183G0150's details annotation
1.Annotation
ICBR annotation: transketolase, putative, expressed
Blast result AT1G30120 : 6.00E-126
Blast annotation: pyruvate dehydrogenase E1 beta
2.Location
Scaffold: PH01000183
Strand: -
| Region | Start | End |
| gene | 122685 | 127065 |
| mRNA | 122685 | 127065 |
| exon | 122685 | 124202 |
| exon | 124304 | 124981 |
| exon | 126125 | 126267 |
| exon | 126382 | 126489 |
| exon | 126669 | 126709 |
| exon | 126996 | 127065 |
| CDS | 124040 | 124202 |
| CDS | 124304 | 124981 |
| CDS | 126125 | 126267 |
| CDS | 126382 | 126489 |
| CDS | 126669 | 126709 |
| CDS | 126996 | 127038 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001279 | cullin-RING ubiquitin ligase complex, ubiquitin protein ligase binding, Nucleotide_excision_repair Ubiquitin_mediated_proteolysis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02779.23 | Transket_pyr | 119 | 289 |
| PF02780.19 | Transketolase_C | 304 | 337 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0008152 | metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.