PH01000183G0650's details annotation
1.Annotation
ICBR annotation: single myb histone, putative, expressed
Blast result AT1G49950 : 1.30E-56
Blast annotation: telomere repeat binding factor 1
2.Location
Scaffold: PH01000183
Strand: +
| Region | Start | End |
| gene | 456208 | 462326 |
| mRNA | 456208 | 462326 |
| exon | 456208 | 456401 |
| exon | 457277 | 457489 |
| exon | 457595 | 457800 |
| exon | 457942 | 458026 |
| exon | 459050 | 459133 |
| exon | 459802 | 460149 |
| exon | 460613 | 462326 |
| CDS | 456297 | 456401 |
| CDS | 457277 | 457489 |
| CDS | 457595 | 457800 |
| CDS | 457942 | 458026 |
| CDS | 459050 | 459133 |
| CDS | 459802 | 460149 |
| CDS | 460613 | 460948 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | MYB-related |
| Transcription_Regulator(from PlantTFDB) | MYB_related |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00249.30 | Myb_DNA-binding | 61 | 112 |
| PF00538.18 | Linker_histone | 177 | 233 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000786 | nucleosome |
| GO:0003677 | DNA binding |
| GO:0003682 | chromatin binding |
| GO:0005634 | nucleus |
| GO:0006334 | nucleosome assembly |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.