PH01000183G0940's details annotation
1.Annotation
ICBR annotation: START domain containing protein, expressed
Blast result AT2G34710 : 0.00E+00
Blast annotation: Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
2.Location
Scaffold: PH01000183
Strand: +
| Region | Start | End |
| gene | 636550 | 647647 |
| mRNA | 636550 | 647647 |
| exon | 636550 | 637004 |
| exon | 637356 | 637438 |
| exon | 638437 | 638596 |
| exon | 638739 | 638854 |
| exon | 638937 | 639027 |
| exon | 639121 | 639216 |
| exon | 639294 | 639407 |
| exon | 639577 | 639660 |
| exon | 639897 | 640052 |
| exon | 640142 | 640216 |
| exon | 640341 | 640415 |
| exon | 640622 | 640696 |
| exon | 640821 | 640927 |
| exon | 641033 | 641225 |
| exon | 641363 | 641551 |
| exon | 641639 | 641719 |
| exon | 641802 | 641936 |
| exon | 642015 | 642340 |
| exon | 642456 | 642600 |
| exon | 642693 | 642842 |
| exon | 642944 | 643024 |
| exon | 645177 | 645379 |
| exon | 645984 | 646324 |
| exon | 646837 | 647145 |
| exon | 647255 | 647389 |
| exon | 647461 | 647647 |
| CDS | 636801 | 637004 |
| CDS | 637356 | 637438 |
| CDS | 638437 | 638596 |
| CDS | 638739 | 638854 |
| CDS | 638937 | 639027 |
| CDS | 639121 | 639216 |
| CDS | 639294 | 639407 |
| CDS | 639577 | 639660 |
| CDS | 639897 | 640052 |
| CDS | 640142 | 640216 |
| CDS | 640341 | 640415 |
| CDS | 640622 | 640696 |
| CDS | 640821 | 640927 |
| CDS | 641033 | 641225 |
| CDS | 641363 | 641551 |
| CDS | 641639 | 641719 |
| CDS | 641802 | 641936 |
| CDS | 642015 | 642340 |
| CDS | 642456 | 642600 |
| CDS | 642693 | 642842 |
| CDS | 642944 | 643024 |
| CDS | 645177 | 645379 |
| CDS | 645984 | 646324 |
| CDS | 646837 | 647145 |
| CDS | 647255 | 647389 |
| CDS | 647461 | 647600 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | HB-HD-ZIP |
| Transcription_Regulator(from PlantTFDB) | HD-ZIP |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00046.28 | Homeobox | 23 | 68 |
| PF01852.18 | START | 192 | 399 |
| PF08670.10 | MEKHLA | 798 | 912 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0043565 | sequence-specific DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.