PH01000183G1300's details annotation
1.Annotation
ICBR annotation: LSD1 zinc finger domain containing protein, expressed
Blast result AT4G20380 : 6.00E-52
Blast annotation: LSD1 zinc finger family protein
2.Location
Scaffold: PH01000183
Strand: +
| Region | Start | End |
| gene | 894083 | 897480 |
| mRNA | 894083 | 897480 |
| exon | 894083 | 895381 |
| exon | 896235 | 896344 |
| exon | 896438 | 896512 |
| exon | 896603 | 896674 |
| exon | 896787 | 897480 |
| CDS | 895270 | 895381 |
| CDS | 896235 | 896344 |
| CDS | 896438 | 896512 |
| CDS | 896603 | 896674 |
| CDS | 896787 | 896831 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | C2C2-LSD |
| Transcription_Regulator(from PlantTFDB) | LSD |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06943.11 | zf-LSD1 | 7 | 31 |
| PF06943.11 | zf-LSD1 | 46 | 70 |
| PF06943.11 | zf-LSD1 | 84 | 108 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.