PH01000184G0020's details annotation
1.Annotation
ICBR annotation: ACT domain containing protein, expressed
Blast result AT1G69040 : 5.00E-157
Blast annotation: ACT domain repeat 4
2.Location
Scaffold: PH01000184
Strand: -
| Region | Start | End |
| gene | 23029 | 27676 |
| mRNA | 23029 | 27676 |
| exon | 23029 | 25044 |
| exon | 25141 | 25245 |
| exon | 25345 | 25944 |
| exon | 26052 | 26131 |
| exon | 26227 | 26341 |
| exon | 26441 | 26486 |
| exon | 26605 | 27676 |
| CDS | 24724 | 25044 |
| CDS | 25141 | 25245 |
| CDS | 25345 | 25944 |
| CDS | 26052 | 26131 |
| CDS | 26227 | 26341 |
| CDS | 26441 | 26486 |
| CDS | 26605 | 26687 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01842.24 | ACT | 134 | 201 |
| PF01842.24 | ACT | 352 | 409 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008152 | metabolic process |
| GO:0016597 | amino acid binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.