PH01000184G0790's details annotation
1.Annotation
ICBR annotation: chlorophyll A-B binding protein, putative, expressed
Blast result AT2G05100 : 2.00E-131
Blast annotation: photosystem II light harvesting complex gene 2.1
2.Location
Scaffold: PH01000184
Strand: -
| Region | Start | End |
| gene | 570119 | 571705 |
| mRNA | 570119 | 571705 |
| exon | 570119 | 570666 |
| exon | 570798 | 571398 |
| exon | 571513 | 571705 |
| CDS | 570217 | 570666 |
| CDS | 570798 | 571398 |
| CDS | 571513 | 571652 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000604 | photosynthesis,_light_harvesting Photosynthesis_-_antenna_proteins membrane, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00504.20 | Chloroa_b-bind | 64 | 229 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Photosynthesis - antenna proteins | light-harvesting complex II chlorophyll a/b binding protein 2 | ko00196 | K08913 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0009765 | photosynthesis, light harvesting |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.