PH01000187G0380's details annotation
1.Annotation
ICBR annotation: nuclear transcription factor Y subunit, putative, expressed
Blast result AT1G17590 : 3.00E-36
Blast annotation: nuclear factor Y, subunit A8
2.Location
Scaffold: PH01000187
Strand: +
| Region | Start | End |
| gene | 269549 | 273698 |
| mRNA | 269549 | 273698 |
| exon | 269549 | 269948 |
| exon | 270036 | 270192 |
| exon | 270996 | 271114 |
| exon | 271155 | 271214 |
| exon | 271325 | 271399 |
| exon | 271742 | 271909 |
| exon | 272395 | 273698 |
| CDS | 269913 | 269948 |
| CDS | 270036 | 270192 |
| CDS | 270996 | 271114 |
| CDS | 271155 | 271214 |
| CDS | 271325 | 271399 |
| CDS | 271742 | 271909 |
| CDS | 272395 | 272763 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | NF-YA |
| Transcription_Regulator(from PlantTFDB) | NF-YA |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02045.14 | CBFB_NFYA | 172 | 227 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0016602 | CCAAT-binding factor complex |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.