PH01000188G1130's details annotation
1.Annotation
ICBR annotation: nitrilase, putative, expressed
Blast result AT5G12040 : 6.00E-127
Blast annotation: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein
2.Location
Scaffold: PH01000188
Strand: +
| Region | Start | End |
| gene | 753792 | 759163 |
| mRNA | 753792 | 759163 |
| exon | 753792 | 755882 |
| exon | 755977 | 756093 |
| exon | 756921 | 757145 |
| exon | 757606 | 757699 |
| exon | 758117 | 758191 |
| exon | 758542 | 758616 |
| exon | 758990 | 759163 |
| CDS | 755799 | 755882 |
| CDS | 755977 | 756093 |
| CDS | 756921 | 757145 |
| CDS | 757606 | 757699 |
| CDS | 758117 | 758191 |
| CDS | 758542 | 758616 |
| CDS | 758990 | 759084 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00795.21 | CN_hydrolase | 70 | 325 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| 260 Alanine, aspartate and glutamate metabolism | omega-amidase [EC:3.5.1.3] | K13566 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006807 | nitrogen compound metabolic process |
| GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.