PH01000188G1330's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G54150 : 4.60E-63
Blast annotation: E3 Ubiquitin ligase family protein
2.Location
Scaffold: PH01000188
Strand: +
| Region | Start | End |
| gene | 960558 | 966243 |
| mRNA | 960558 | 966243 |
| exon | 960558 | 961257 |
| exon | 961541 | 961612 |
| exon | 963801 | 963971 |
| exon | 964065 | 964186 |
| exon | 964379 | 964498 |
| exon | 964746 | 966243 |
| CDS | 960940 | 961257 |
| CDS | 961541 | 961612 |
| CDS | 963801 | 963971 |
| CDS | 964065 | 964186 |
| CDS | 964379 | 964498 |
| CDS | 964746 | 965037 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12483.7 | GIDE | 125 | 261 |
| PF13920.5 | zf-C3HC4_3 | 310 | 357 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
| GO:0016881 | acid-amino acid ligase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.