Annotation of co-expression genes

PH01000190G0650's details annotation

1.Annotation

ICBR annotation: protein kinase domain containing protein, expressed

Blast result AT3G24550 : 6.90E-68
Blast annotation: proline extensin-like receptor kinase 1

2.Location

Scaffold: PH01000190
Strand: +

RegionStartEnd
gene428661434030
mRNA428661434030
exon428661429414
exon429461429531
exon430028430104
exon431046431288
exon432107432254
exon432841433002
exon433299434030
CDS429285429414
CDS429461429531
CDS430028430104
CDS431046431288
CDS432107432254
CDS432841433002
CDS433299433607

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00069.24Pkinase4787
PF00550.24PP-binding111169
PF07714.16Pkinase_Tyr164282

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0006633fatty acid biosynthetic process
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.