Annotation of co-expression genes

PH01000192G0830's details annotation

1.Annotation

ICBR annotation: photosystem I P700 chlorophyll a apoprotein A1, putative

Blast result ATCG00350 : 0
Blast annotation: Photosystem I, PsaA/PsaB protein

2.Location

Scaffold: PH01000192
Strand: -

RegionStartEnd
gene607475611053
mRNA607475611053
exon607475609953
exon610383611053
CDS608466609953
CDS610383610760

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00223.18PsaA_PsaB127614

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003676nucleic acid binding
GO:0009522photosystem I
GO:0009579thylakoid
GO:0015074DNA integration
GO:0015979photosynthesis
GO:0016021integral to membrane
GO:0046872metal ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.