PH01000193G0320's details annotation
1.Annotation
ICBR annotation: ariadne-1, putative, expressed
Blast result AT2G16090 : 3.60E-87
Blast annotation: RING/U-box superfamily protein
2.Location
Scaffold: PH01000193
Strand: -
| Region | Start | End |
| gene | 216709 | 223947 |
| mRNA | 216709 | 223947 |
| exon | 216709 | 216935 |
| exon | 217062 | 217255 |
| exon | 217356 | 217904 |
| exon | 218399 | 218483 |
| exon | 219424 | 219496 |
| exon | 220586 | 220695 |
| exon | 221669 | 221945 |
| exon | 222048 | 222080 |
| exon | 222170 | 223947 |
| CDS | 216778 | 216935 |
| CDS | 217062 | 217255 |
| CDS | 217356 | 217904 |
| CDS | 218399 | 218483 |
| CDS | 219424 | 219496 |
| CDS | 220586 | 220695 |
| CDS | 221669 | 221945 |
| CDS | 222048 | 222080 |
| CDS | 222170 | 222343 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000973 | STE_STE11 (from iTAK) protein import into nucleus, RNA_degradation phospholipid transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.