PH01000194G0150's details annotation
1.Annotation
ICBR annotation: MBTB43 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed
Blast result AT5G19000 : 8.50E-51
Blast annotation: BTB-POZ and MATH domain 1
2.Location
Scaffold: PH01000194
Strand: -
| Region | Start | End |
| gene | 115201 | 116797 |
| mRNA | 115201 | 116797 |
| exon | 115201 | 116797 |
| CDS | 115242 | 116252 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000431 | Porphyrin_and_chlorophyll_metabolism C2C2-Dof Transcription_Regulator(from iTAK) HB-BELL Transcription_Regulator(from iTAK) TRAF Transcription_Regulator(from iTAK) Dof Transcription_Regulator(from PlantTFDB) TALE Transcription_Regulator(from PlantTFDB) oxygen-dependent protoporphyrinogen oxidase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | TRAF |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00651.30 | BTB | 156 | 267 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.