PH01000194G1030's details annotation
1.Annotation
ICBR annotation: Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
Blast result AT3G54560 : 3.70E-53
Blast annotation: histone H2A 11
2.Location
Scaffold: PH01000194
Strand: -
| Region | Start | End |
| gene | 825466 | 828169 |
| mRNA | 825466 | 828169 |
| exon | 825466 | 827044 |
| exon | 827848 | 828169 |
| CDS | 826748 | 827044 |
| CDS | 827848 | 827976 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000261 | protein_heterodimerization_activity NF-YB Transcription_Regulator(from PlantTFDB) nucleosome assembly, GRAS Transcription_Regulator(from PlantTFDB) nucleosome, Base_excision_repair Nucleotide_excision_repair DNA_replication |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00125.23 | Histone | 22 | 110 |
| PF16211.4 | Histone_H2A_C | 111 | 140 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000786 | nucleosome |
| GO:0003677 | DNA binding |
| GO:0005634 | nucleus |
| GO:0006334 | nucleosome assembly |
| GO:0046982 | protein heterodimerization activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.