PH01000196G0330's details annotation
1.Annotation
ICBR annotation: OsSCP55 - Putative Serine Carboxypeptidase homologue, expressed
Blast result AT1G33540 : 4.00E-54
Blast annotation: serine carboxypeptidase-like 18
2.Location
Scaffold: PH01000196
Strand: -
| Region | Start | End |
| gene | 267722 | 269321 |
| mRNA | 267722 | 269321 |
| exon | 267722 | 267829 |
| exon | 268087 | 268189 |
| exon | 268419 | 268618 |
| exon | 268698 | 268843 |
| exon | 268924 | 269321 |
| CDS | 267810 | 267829 |
| CDS | 268087 | 268189 |
| CDS | 268419 | 268618 |
| CDS | 268698 | 268843 |
| CDS | 268924 | 269084 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00450.21 | Peptidase_S10 | 41 | 204 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004185 | serine-type carboxypeptidase activity |
| GO:0006508 | proteolysis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.