PH01000197G0460's details annotation
1.Annotation
ICBR annotation: OsFBT4 - F-box and tubby domain containing protein, expressed
Blast result AT1G47270 : 2.00E-121
Blast annotation: tubby like protein 6
2.Location
Scaffold: PH01000197
Strand: -
| Region | Start | End |
| gene | 316214 | 319969 |
| mRNA | 316214 | 319969 |
| exon | 316214 | 317688 |
| exon | 317805 | 317937 |
| exon | 318886 | 318973 |
| exon | 319073 | 319969 |
| CDS | 317016 | 317688 |
| CDS | 317805 | 317937 |
| CDS | 318886 | 318973 |
| CDS | 319073 | 319453 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | TUB |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00646.32 | F-box | 64 | 113 |
| PF01167.17 | Tub | 127 | 419 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.