PH01000199G0530's details annotation
1.Annotation
ICBR annotation: OsFBO3 - F-box and other domain containing protein, expressed
Blast result AT1G67340 : 4.00E-106
Blast annotation: HCP-like superfamily protein with MYND-type zinc finger
2.Location
Scaffold: PH01000199
Strand: -
| Region | Start | End |
| gene | 468686 | 470359 |
| mRNA | 468686 | 470359 |
| exon | 468686 | 469412 |
| exon | 469471 | 469631 |
| exon | 469737 | 469899 |
| exon | 470004 | 470359 |
| CDS | 469034 | 469412 |
| CDS | 469471 | 469631 |
| CDS | 469737 | 469899 |
| CDS | 470004 | 470263 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01753.17 | zf-MYND | 325 | 365 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.