PH01000200G0080's details annotation
1.Annotation
ICBR annotation: ZOS4-11 - C2H2 zinc finger protein, expressed
Blast result AT4G02670 : 7.80E-71
Blast annotation: indeterminate(ID)-domain 12
2.Location
Scaffold: PH01000200
Strand: +
| Region | Start | End |
| gene | 52463 | 57190 |
| mRNA | 52463 | 57190 |
| exon | 52463 | 53558 |
| exon | 54746 | 55226 |
| exon | 55494 | 57190 |
| CDS | 53351 | 53558 |
| CDS | 54746 | 55226 |
| CDS | 55494 | 55530 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | C2H2 |
| Transcription_Regulator(from PlantTFDB) | C2H2 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12171.7 | zf-C2H2_jaz | 116 | 138 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.