PH01000200G0560's details annotation
1.Annotation
ICBR annotation: ORM1, putative, expressed
Blast result AT1G01230 : 5.10E-77
Blast annotation: ORMDL family protein
2.Location
Scaffold: PH01000200
Strand: +
| Region | Start | End |
| gene | 453808 | 458758 |
| mRNA | 453808 | 458758 |
| exon | 453808 | 454151 |
| exon | 455501 | 455649 |
| exon | 457626 | 458758 |
| CDS | 453966 | 454151 |
| CDS | 455501 | 455649 |
| CDS | 457626 | 457764 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000293 | RLK-Pelle_CrRLK1L-1 (from iTAK) RLK-Pelle_LRR-XII-1 (from iTAK) GT1 GlycosylTransferases |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04061.13 | ORMDL | 15 | 149 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.