Annotation of co-expression genes

PH01000201G0100's details annotation

1.Annotation

ICBR annotation: peroxidase precursor, putative, expressed

Blast result AT5G66390 : 1.00E-131
Blast annotation: Peroxidase superfamily protein

2.Location

Scaffold: PH01000201
Strand: -

RegionStartEnd
gene7052973974
mRNA7052973974
exon7052971234
exon7203972279
exon7338873579
exon7365673974
CDS7081971234
CDS7203972279
CDS7338873579
CDS7365673892

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000151SNF2 Transcription_Regulator(from iTAK)
response to oxidative stress,
ATP-dependent helicase activity,
helicase activity,
peroxidase activity,
heme binding,
oxidation-reduction process,
Phenylalanine_metabolism
Phenylpropanoid_biosynthesis
Methane_metabolism
nucleic acid binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00141.22peroxidase54298

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Phenylalanine metabolismperoxidase [EC:1.11.1.7]ko00360K00430
Phenylpropanoid biosynthesisperoxidase [EC:1.11.1.7]ko00940K00430
Methane metabolismperoxidase [EC:1.11.1.7]ko00680K00430

10.Gene Ontology

GO AccessionGO Annotation
GO:0004601peroxidase activity
GO:0006979response to oxidative stress
GO:0020037heme binding
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.