PH01000203G0150's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G57710 : 1.30E-88
Blast annotation: Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein
2.Location
Scaffold: PH01000203
Strand: -
| Region | Start | End |
| gene | 100656 | 104418 |
| mRNA | 100656 | 104418 |
| exon | 100656 | 102753 |
| exon | 102869 | 103100 |
| exon | 103194 | 104418 |
| CDS | 101329 | 102753 |
| CDS | 102869 | 103100 |
| CDS | 103194 | 103897 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000276 | C2C2-Dof Transcription_Regulator(from iTAK) Dof Transcription_Regulator(from PlantTFDB) Endocytosis RLK-Pelle_LRR-III (from iTAK) vesicle docking involved in exocytosis, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07724.13 | AAA_2 | 435 | 556 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005524 | ATP binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.