PH01000203G0290's details annotation
1.Annotation
ICBR annotation: cyclic nucleotide-gated ion channel 14, putative, expressed
Blast result AT4G30360 : 0.00E+00
Blast annotation: cyclic nucleotide-gated channel 17
2.Location
Scaffold: PH01000203
Strand: -
| Region | Start | End |
| gene | 181467 | 188576 |
| mRNA | 181467 | 188576 |
| exon | 181467 | 182269 |
| exon | 182851 | 183087 |
| exon | 183232 | 183343 |
| exon | 183664 | 183953 |
| exon | 184104 | 184316 |
| exon | 185077 | 185575 |
| exon | 187368 | 187545 |
| exon | 188342 | 188576 |
| CDS | 181598 | 182269 |
| CDS | 182851 | 183087 |
| CDS | 183232 | 183343 |
| CDS | 183664 | 183953 |
| CDS | 184104 | 184316 |
| CDS | 185077 | 185575 |
| CDS | 187368 | 187545 |
| CDS | 188342 | 188348 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00520.30 | Ion_trans | 118 | 443 |
| PF00027.28 | cNMP_binding | 537 | 627 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005216 | ion channel activity |
| GO:0005249 | voltage-gated potassium channel activity |
| GO:0006811 | ion transport |
| GO:0006813 | potassium ion transport |
| GO:0016020 | membrane |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.