PH01000205G0590's details annotation
1.Annotation
ICBR annotation: ATP-dependent RNA helicase, putative, expressed
Blast result AT1G27900 : 2.30E-75
Blast annotation: RNA helicase family protein
2.Location
Scaffold: PH01000205
Strand: -
| Region | Start | End |
| gene | 472091 | 479968 |
| mRNA | 472091 | 479968 |
| exon | 472091 | 472672 |
| exon | 474074 | 474166 |
| exon | 474687 | 474901 |
| exon | 475029 | 475115 |
| exon | 475894 | 475985 |
| exon | 478239 | 478322 |
| exon | 478606 | 479968 |
| CDS | 472401 | 472672 |
| CDS | 474074 | 474166 |
| CDS | 474687 | 474901 |
| CDS | 475029 | 475115 |
| CDS | 475894 | 475985 |
| CDS | 478239 | 478322 |
| CDS | 478606 | 478794 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00271.30 | Helicase_C | 94 | 164 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0004386 | helicase activity |
| GO:0005524 | ATP binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.