Annotation of co-expression genes

PH01000205G0840's details annotation

1.Annotation

ICBR annotation: WD domain, G-beta repeat domain containing protein, expressed

Blast result AT5G66240 : 7.00E-129
Blast annotation: Transducin/WD40 repeat-like superfamily protein

2.Location

Scaffold: PH01000205
Strand: -

RegionStartEnd
gene679589689308
mRNA679589689308
exon679589681078
exon681163681209
exon681296681380
exon681463681600
exon681666681779
exon682421682520
exon682610682676
exon682743682843
exon685783685886
exon687681687766
exon687888689308
CDS680914681078
CDS681163681209
CDS681296681380
CDS681463681600
CDS681666681779
CDS682421682520
CDS682610682676
CDS682743682843
CDS685783685886
CDS687681687766
CDS687888687894

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00400.31WD40113148
PF00400.31WD40246278

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
mRNA surveillance pathwayCOMPASS component SWD2ko03015K14962

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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