PH01000206G0370's details annotation
1.Annotation
ICBR annotation: PX domain containing protein, expressed
Blast result AT5G07120 : 6.60E-35
Blast annotation: sorting nexin 2B
2.Location
Scaffold: PH01000206
Strand: -
| Region | Start | End |
| gene | 232148 | 237174 |
| mRNA | 232148 | 237174 |
| exon | 232148 | 233373 |
| exon | 233526 | 234632 |
| exon | 236611 | 237174 |
| CDS | 233356 | 233373 |
| CDS | 233526 | 234632 |
| CDS | 236611 | 236613 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00787.23 | PX | 175 | 284 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0007154 | cell communication |
| GO:0035091 | phosphatidylinositol binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.