PH01000207G0760's details annotation
1.Annotation
ICBR annotation: galactosyltransferase family protein, putative, expressed
Blast result AT3G06440 : 3.70E-38
Blast annotation: Galactosyltransferase family protein
2.Location
Scaffold: PH01000207
Strand: -
| Region | Start | End |
| gene | 537434 | 540052 |
| mRNA | 537434 | 540052 |
| exon | 537434 | 537526 |
| exon | 537871 | 538146 |
| exon | 538270 | 538489 |
| exon | 538523 | 538568 |
| exon | 539667 | 540052 |
| CDS | 537521 | 537526 |
| CDS | 537871 | 538146 |
| CDS | 538270 | 538489 |
| CDS | 538523 | 538568 |
| CDS | 539667 | 539721 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000368 | GH1 Glycoside_Hydrolases polysaccharide catabolic process, protein glycosylation, |
| coexpression network | CFinderM000493 | acyl-[acyl-carrier-protein] desaturase activity, transition metal ion binding, fatty acid metabolic process, Plant_hormone_signal_transduction bZIP Transcription_Regulator(from PlantTFDB) oxidoreductase activity, galactosyltransferase activity, serine-type carboxypeptidase activity, |
| coexpression network | CFinderM001033 | Arachidonic_acid_metabolism Linoleic_acid_metabolism electron carrier activity, iron ion binding, heme binding, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, galactosyltransferase activity, bHLH Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006486 | protein glycosylation |
| GO:0008378 | galactosyltransferase activity |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.