PH01000209G0060's details annotation
1.Annotation
ICBR annotation: OsRhmbd2 - Putative Rhomboid homologue, expressed
Blast result AT3G56740 : 1.10E-71
Blast annotation: Ubiquitin-associated (UBA) protein
2.Location
Scaffold: PH01000209
Strand: +
| Region | Start | End |
| gene | 30909 | 40462 |
| mRNA | 30909 | 40462 |
| exon | 30909 | 33149 |
| exon | 33445 | 33514 |
| exon | 33977 | 34043 |
| exon | 34925 | 35079 |
| exon | 35172 | 35273 |
| exon | 36080 | 36096 |
| exon | 36363 | 36857 |
| exon | 37699 | 37744 |
| exon | 38286 | 40462 |
| CDS | 32905 | 33149 |
| CDS | 33445 | 33514 |
| CDS | 33977 | 34043 |
| CDS | 34925 | 35079 |
| CDS | 35172 | 35273 |
| CDS | 36080 | 36096 |
| CDS | 36363 | 36857 |
| CDS | 37699 | 37744 |
| CDS | 38286 | 38453 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01694.21 | Rhomboid | 46 | 190 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.